IGVFFI6309QCHM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI6309QCHM/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6309QCHM",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_5365_R1"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "a05723c2efc8f684655816cfbddcdb19",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-03-09T16:00:30.241709+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS6909NSFT/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS6909NSFT",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/tissues/IGVFSM9503WHHQ/",
44                "@type": [
45                    "Tissue",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM9503WHHQ",
51                "classifications": [
52                    "tissue"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/UBERON_0000955/",
57                        "status": "released",
58                        "term_name": "brain"
59                    }
60                ],
61                "status": "released",
62                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 433)",
63                "taxa": "Mus musculus"
64            }
65        ],
66        "status": "released",
67        "summary": "single-cell ATAC-seq (SHARE-seq)"
68    },
69    "file_size": 6543059263,
70    "flowcell_id": "22KHF5LT3",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI6309QCHM/@@download/IGVFFI6309QCHM.fastq.gz",
73    "illumina_read_type": "R1",
74    "input_file_for": [
75        "/alignment-files/IGVFFI3872NBHI/",
76        "/tabular-files/IGVFFI5042DAMZ/"
77    ],
78    "integrated_in": [],
79    "lab": {
80        "@id": "/labs/jason-buenrostro/",
81        "title": "Jason Buenrostro, Broad"
82    },
83    "loci_list_for": [],
84    "maximum_read_length": 100,
85    "md5sum": "aeecd9b5010760e4d8ea724f98d56838",
86    "mean_read_length": 100,
87    "minimum_read_length": 100,
88    "quality_metrics": [],
89    "read_count": 149253593,
90    "read_names": [
91        "Read 1"
92    ],
93    "release_timestamp": "2025-03-28T21:22:39.065291+00:00",
94    "s3_uri": "s3://igvf-files/2025/03/09/2c528d9d-b409-4d22-87ef-38ad9af44fef/IGVFFI6309QCHM.fastq.gz",
95    "schema_version": "15",
96    "seqspecs": [
97        "/configuration-files/IGVFFI2731URZQ/"
98    ],
99    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
100    "sequencing_platform": {
101        "@id": "/platform-terms/EFO_0008637/",
102        "status": "released",
103        "term_name": "Illumina NovaSeq 6000"
104    },
105    "sequencing_run": 5365,
106    "status": "released",
107    "submitted_by": {
108        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
109        "title": "Siddarth Wekhande"
110    },
111    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-1575_L2_SS-PKR-433_2022-APRIL-R1-SET-OF-192_R1.fastq.gz",
112    "summary": "R1 reads from sequencing run 5365",
113    "upload_status": "validated",
114    "uuid": "2c528d9d-b409-4d22-87ef-38ad9af44fef"
115}