IGVFFI6296YCUD

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI6296YCUD/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6296YCUD",
10    "aliases": [
11        "buenrostro-bernstein:surya-APC-SHARE-02-5k-RNA.barcode.fastq.gz"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v19",
22    "content_md5sum": "de41b8cd2818aeab96b2e8f5e2f47454",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-03-14T15:49:05.049087+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS5523WWKM/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5523WWKM",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "data_use_limitation_summaries": [
41            "no certificate"
42        ],
43        "file_set_type": "experimental data",
44        "samples": [
45            {
46                "@id": "/tissues/IGVFSM6844DNNZ/",
47                "@type": [
48                    "Tissue",
49                    "Biosample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM6844DNNZ",
54                "classifications": [
55                    "tissue"
56                ],
57                "sample_terms": [
58                    {
59                        "@id": "/sample-terms/UBERON_0001155/",
60                        "status": "released",
61                        "term_name": "colon"
62                    }
63                ],
64                "status": "released",
65                "summary": "Mus musculus C57BL/6J colon tissue",
66                "taxa": "Mus musculus"
67            }
68        ],
69        "status": "released",
70        "summary": "single-cell RNA sequencing assay (SHARE-seq)"
71    },
72    "file_size": 1548690220,
73    "gene_list_for": [],
74    "href": "/sequence-files/IGVFFI6296YCUD/@@download/IGVFFI6296YCUD.fastq.gz",
75    "illumina_read_type": "I1",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/jason-buenrostro/",
80        "title": "Jason Buenrostro, Broad"
81    },
82    "loci_list_for": [],
83    "maximum_read_length": 32,
84    "md5sum": "ba62da352a7df271b757c83380f2ef3f",
85    "mean_read_length": 32,
86    "minimum_read_length": 32,
87    "quality_metrics": [],
88    "read_count": 75565782,
89    "read_names": [
90        "Barcode index"
91    ],
92    "release_timestamp": "2025-03-26T17:33:41.622487+00:00",
93    "s3_uri": "s3://igvf-files/2025/03/14/5a8ba58e-90d5-4250-82b9-3dfac2c73005/IGVFFI6296YCUD.fastq.gz",
94    "schema_version": "15",
95    "seqspecs": [
96        "/configuration-files/IGVFFI5486UCDZ/"
97    ],
98    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
99    "sequencing_platform": {
100        "@id": "/platform-terms/EFO_0008637/",
101        "status": "released",
102        "term_name": "Illumina NovaSeq 6000"
103    },
104    "sequencing_run": 1,
105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
108        "title": "Siddarth Wekhande"
109    },
110    "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/barcode-file/APC-SHARE-02-5k-RNA.barcode.fastq.gz",
111    "summary": "I1 reads from sequencing run 1",
112    "upload_status": "validated",
113    "uuid": "5a8ba58e-90d5-4250-82b9-3dfac2c73005"
114}