IGVFFI6277HPGS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8426LZVO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G1_P053_L002_R1

md5sum

d6953c25ca34f8a7f4682139ff7d25bd

Content MD5sum

4fe4f5c56a71bccd44b6e2bb00f27a3c

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP004_G1_L001_P053_S9_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63169114

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5141FLXJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples