IGVFFI6265KQIS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5070YLLC(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X038_G4_P040_L004_R1

md5sum

fd41d7e17d940326b8f99027519aa2dc

Content MD5sum

629aa091b862658c0885ef91c3dc4d2c

File Size

3.7 GB

Submitted File Name

Multiome_RNA_X038_G4_L004_P040_S18_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

177963131

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0937HBMF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples