IGVFFI6262BNCO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3732KKVV(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G6_P059_L005_R2

md5sum

8b09ec3f246b6e522dff2e809b8943c2

Content MD5sum

a70138cd12986bef6de04b3861c4243a

File Size

972 MB

Submitted File Name

Multiome_ATAC_RP012_G6_L006_P059_S86_L005_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55630471

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5046SGAL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples