IGVFFI6258XDGS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9083ZGEJ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G7_P051_L006_R2

md5sum

c09498bbfcb535f80675602e839b0ec1

Content MD5sum

3ff39d775f0e282fdc244994dee4350d

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_RP002_G7_L007_P051_S35_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

71593225

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2339RJIS

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples