IGVFFI6236KLRE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8026EGBN(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X020_G6_P019_L003_R1

md5sum

18db20af5ce79b0293006739e6e92c4e

Content MD5sum

f552ab63942e15f32b6ebb3e23f629eb

File Size

7.0 GB

Submitted File Name

Multiome_ATAC_X020_G6_L006_P019_S38_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

218088773

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1357KOCB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples