IGVFFI6231RCVN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI6231RCVN/",
4    "@type": [
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6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6231RCVN",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_4258_R2"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
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21    "checkfiles_version": "v20",
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23    "content_type": "reads",
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25    "creation_timestamp": "2024-08-20T15:25:34.657813+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
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35        "accession": "IGVFDS4642GQLX",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
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40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/in-vitro-systems/IGVFSM0636UWGR/",
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47                    "Sample",
48                    "Item"
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51                "classifications": [
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53                    "differentiated cell specimen"
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55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/EFO_0004905/",
58                        "status": "released",
59                        "term_name": "induced pluripotent stem cell"
60                    }
61                ],
62                "status": "released",
63                "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 199)",
64                "targeted_sample_term": {
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66                    "status": "released",
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82    "lab": {
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84        "title": "Jason Buenrostro, Broad"
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92    "read_count": 43398880,
93    "read_names": [
94        "Read 2"
95    ],
96    "release_timestamp": "2025-04-10T21:08:43.756868+00:00",
97    "s3_uri": "s3://igvf-restricted-files/2024/08/20/4072ef6b-2a9f-4bc0-a930-5ccd78f17196/IGVFFI6231RCVN.fastq.gz",
98    "schema_version": "15",
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102    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
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105        "status": "released",
106        "term_name": "Illumina NovaSeq X"
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108    "sequencing_run": 4258,
109    "status": "released",
110    "submitted_by": {
111        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
112        "title": "Siddarth Wekhande"
113    },
114    "submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/d37e7af6-1c55-4ac8-b551-ceee5775e3db/call-create_fastq_barcode/shard-9/SS-CoPA-636_L8_SS-PKR-199_2022-APRIL-R1-PLATE2-2nd-THIRD_R2.R2.fastq.gz",
115    "summary": "R2 reads from sequencing run 4258",
116    "upload_status": "validated",
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118}