IGVFFI6227NVBN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2373GWYA(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G1_P061_L002_R1

md5sum

6ce94d0ea2b762f33d4977117b8dc1e7

Content MD5sum

f3b3825e7282d83513b38a8be493377a

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP013_G1_L001_P061_S1_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60155220

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3819ZCMN

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples