IGVFFI6219ARYQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9592YGDY(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X034_G7_P036_L004_I1

md5sum

3164a0e6bfc0624244dca79b164262da

Content MD5sum

149552fd402b67be06e08715b37438ab

File Size

1.5 GB

Submitted File Name

Multiome_RNA_X034_G7_L007_P036_S45_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

242347332

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3181SBTD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 80 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples