IGVFFI6216HBER

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI6216HBER/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI6216HBER",
    "aliases": [
        "charles-gersbach:cd8-tcells-atac-seq-chronic-activation-batf3-rep2-fastq-R2"
    ],
    "assay_titles": [
        "ATAC-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization"
    },
    "content_md5sum": "1ddeb2b7ae25f02eb968b491eeddfbb3",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-11-08T20:41:39.073905+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS5328ZNKL/",
        "accession": "IGVFDS5328ZNKL",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/primary-cells/IGVFSM7232YAVV/",
                "accession": "IGVFSM7232YAVV",
                "classifications": [
                    "primary cell"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000909/",
                        "term_name": "CD8-positive, alpha-beta memory T cell"
                    }
                ],
                "summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library",
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "ATAC-seq integrating a expression vector library of BATF3"
    },
    "file_size": 1635529027,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI6216HBER/@@download/IGVFFI6216HBER.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/alignment-files/IGVFFI9649KWTN/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 51,
    "md5sum": "05713206ae6a166daa9ad804ff999772",
    "mean_read_length": 51,
    "minimum_read_length": 51,
    "read_count": 50757607,
    "release_timestamp": "2024-10-29T17:33:31.913801+00:00",
    "s3_uri": "s3://igvf-files/2023/11/08/0093a7df-fce3-463f-99b8-d224b66d9585/IGVFFI6216HBER.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NextSeq 1000/2000 P2 Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0010963/",
        "term_name": "Illumina NextSeq 2000"
    },
    "sequencing_run": 2,
    "status": "released",
    "submitted_by": {
        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
        "title": "Alejandro Barrera"
    },
    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_2_T_cell_project_1/C70-2_S4_L001_R2_001.fastq.gz",
    "summary": "R2 reads from sequencing run 2",
    "upload_status": "validated",
    "uuid": "0093a7df-fce3-463f-99b8-d224b66d9585"
}