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INDEXED
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SequenceFile
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IGVFFI6200IGQH
IGVFFI6200IGQH
released
validated
Json view
File Set
IGVFDS9237NVSE
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x7_NGS2_r1
md5sum
707a9a545a47505c5ecb03225024ca6e
Content MD5sum
438b3f97437800fec7ac4889e8fd036a
File Size
5.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC7_S11_L004_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
167309446
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6125HAMH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4483MEPB
tsv
fragments
fragments
Ansuman Satpathy, Stanford
7.3 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI3113FXPW
yaml
seqspec
seqspec of IGVFFI4172DSAX, IGVFFI6200IGQH, IGVFFI2558KTXC, IGVFFI6527QKEQ
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford