IGVFFI6195RMDE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3718OSOX(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X028_G2_P027_L003_R1

md5sum

f172e9d6403c300590950bae75a7d34a

Content MD5sum

d58f5edc7857de3c0f9188f240a2fef1

File Size

7.2 GB

Submitted File Name

Multiome_ATAC_X028_G2_L002_P027_S19_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

230962143

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1341HRWL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples