IGVFFI6171LCNK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8114LYKO(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X031_G4_P032_L004_R1

md5sum

1042deceb4e575f98a913262674bc408

Content MD5sum

257ffb4c2acf554bc889dffb5f33adf2

File Size

12 GB

Submitted File Name

Multiome_RNA_X031_G4_L004_P032_S46_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

185094055

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8255CJVL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples