IGVFFI6170DQVL

released
validated
File Set
IGVFDS1862OQFF(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_KITLG-Auxin0hrs-FF3-BinC-PCR2_S33
md5sum
e98d44c03d9907d9399099d0f99a4d79
Content MD5sum
d8661ed99083e5024540fc28d75125cc
File Size
8.6 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/220104B013_Cohesin_KITLG/fastq_trim/Auxin0hrs-FF3-BinC-PCR2_S33_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Index
CGTTACCA:CTCT
Average Read Length
21
Read Count
355161

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6170DQVL
Jesse Engreitz, Stanford
902 B
validated

Attribution