IGVFFI6158DTUG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3115SXPF(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP003_G2_P053_L003_R1

md5sum

c9a242e22cea9dcb957ae1f32c7654a9

Content MD5sum

dcad5afa01c8d08bd00ee9e5316305ee

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP003_G2_L002_P053_S2_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

51245640

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4281HPKU

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples