IGVFFI6144LBTJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1310RPDD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G4_P041_L002_R3

md5sum

48c3aebc31c2ecef4f14c64b3457eedb

Content MD5sum

a073041385220342473bf84ceb68d232

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_X040_G4_L004_P041_S6_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

59355572

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1867DNXU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples