IGVFFI6095DSDK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3035QFKU(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G8_P059_L006_I1

md5sum

9d5d8d6f2e69fb544b08a3fce7b21c00

Content MD5sum

b3b9a001a9683fbec85e97cfeb2a5f96

File Size

496 MB

Submitted File Name

Multiome_ATAC_RP011_G8_L008_P059_S80_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

64414879

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3747QRCH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples