Home

IGVFFI6088QALC

released
validated
File Set
IGVFDS4882ESVG(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp0_multi_10x1_NGS1_i1
md5sum
b9bbf6f4133d80e5062a2bed6cf37bb2
Content MD5sum
c5f77b4877d203ae3050e9f352261735
File Size
1.1 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230622_IGVF0_McGinnis/MULTI/MULTI2_S56_L003_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HJ7GYDSX5
Lane
3
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
8
Read Count
176597446

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days; ... and 21 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
403 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4642YKWI, IGVFFI5411OJRK, IGVFFI5223HYRP, IGVFFI6088QALC
Ansuman Satpathy, Stanford
1.3 KB
validated