Home

IGVFFI6077TUWY

released
validated
File Set
IGVFDS2114XGWE(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp13_rna_10x4_NGS2_r2
md5sum
f7d2f1d35c6d44a69aed2fb677e5a8ec
Content MD5sum
11656863a3d971568429c424258879ff
File Size
14 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF13_McGinnis/GEX/FASTQ/igvf13_s4_rna_S4_L002_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22HHHWLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
346637674

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
131 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7978EGKO, IGVFFI6077TUWY, IGVFFI3147EJTJ, IGVFFI8058KVMJ
Ansuman Satpathy, Stanford
1.4 KB
validated