IGVFFI6051HKOY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1728ZLAX(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G5_P051_L007_R1

md5sum

9d2d506b1ae62888c5525fe6c8a84d82

Content MD5sum

4b6775b6452b8e957f7d55305fc6bd1b

File Size

2.5 GB

Submitted File Name

Multiome_ATAC_RP001_G5_L005_P051_S25_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

84579053

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7076WLCU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples