IGVFFI6045NRXK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6930SNMF(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X028_G5_P027_L003_I1

md5sum

1ee8126e4d157103a5594854e255ee12

Content MD5sum

63a256c9999f284b75f4b2ec50cf86e3

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_X028_G5_L005_P027_S22_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

233009751

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4526FRYV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples