IGVFFI6038QWXK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0600TBEL(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G8_P035_L003_R1

md5sum

80fef5129c7f44139ae72a2662af25bc

Content MD5sum

0007563641c7611e80fd2740180ec867

File Size

14 GB

Submitted File Name

Multiome_ATAC_X035_G8_L008_P035_S40_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

262186160

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0431MAJD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples