IGVFFI6032WTOD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3971IMCD(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X009_G3_P007_L003_R1

md5sum

8cbb44799fcaada196c0ee338da3b2b5

Content MD5sum

3799cfa3e5d3d18aa5c7a69027849c51

File Size

8.4 GB

Submitted File Name

Multiome_ATAC_X009_G3_L003_P007_S23_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

157630950

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6970GFLR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples