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INDEXED
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SequenceFile
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IGVFFI6023VYHA
IGVFFI6023VYHA
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0926BXUA
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X013_G7_P012_L004_R1
md5sum
e9a0729c3a7589d67b4ba6765dafe23a
Content MD5sum
52b355dce096fdf069b22fa5450c5c9d
File Size
5.2 GB
Submitted File Name
Multiome_RNA_X013_G7_L007_P012_S25_L004_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HJ7TNDSX5
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
28
Read Count
248254220
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2380OLTQ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples