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INDEXED
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SequenceFile
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IGVFFI6016PTEZ
IGVFFI6016PTEZ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9755ETJZ
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP009_G5_P058_L003_R1
md5sum
970d890aaf6f1ae2b365d79dc7e7f15f
Content MD5sum
209abb2d424a97d3f36d83658751f120
File Size
1.2 GB
Submitted File Name
Multiome_RNA_RP009_G5_L005_P058_S13_L003_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223HCCLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
62146645
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3999SNMB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples