IGVFFI6013VHDW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9558NTBE(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G6_P065_L006_R3

md5sum

01396c22eedb70d57134731de50d35b2

Content MD5sum

334ebb1e8091b261439a1d754eba0daa

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_X050_G6_L006_P065_S36_L006_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53726247

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8373BGDE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples