IGVFFI6004NZWH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1256KMVV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X051_G1_P069_L003_R1

md5sum

5b39feed3311400462abaf2a25986c04

Content MD5sum

41cb8cfefc0abe31fabcbf0efbdc58a1

File Size

9.6 GB

Submitted File Name

Multiome_ATAC_X051_G1_L001_P069_S9_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

137109982

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2530JHLD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples