IGVFFI6003GFRB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2781TJKC(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X023_G8_P021_L001_R3

md5sum

111d0907cf7074535b4684e341e0fb8a

Content MD5sum

619bdd1d72bba2c822ee197f45b0bf80

File Size

4.6 GB

Submitted File Name

Multiome_ATAC_X023_G8_L008_P021_S14_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

141368012

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5496IUQF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 75 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples