IGVFFI5993XTCF

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI5993XTCF/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5993XTCF",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "53de466f12b90a6956173d882c3b15b9",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-07T02:49:26.478976+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS3799GMAV/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS3799GMAV",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "file_set_type": "experimental data",
37        "samples": [
38            {
39                "@id": "/multiplexed-samples/IGVFSM4345ZMKN/",
40                "@type": [
41                    "MultiplexedSample",
42                    "Sample",
43                    "Item"
44                ],
45                "accession": "IGVFSM4345ZMKN",
46                "classifications": [
47                    "tissue",
48                    "multiplexed sample"
49                ],
50                "disease_terms": [],
51                "modifications": [],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/UBERON_0000007/",
55                        "status": "released",
56                        "term_name": "pituitary gland"
57                    },
58                    {
59                        "@id": "/sample-terms/UBERON_0001898/",
60                        "status": "released",
61                        "term_name": "hypothalamus"
62                    },
63                    {
64                        "@id": "/sample-terms/UBERON_0002107/",
65                        "status": "released",
66                        "term_name": "liver"
67                    }
68                ],
69                "status": "released",
70                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
71                "taxa": "Mus musculus",
72                "treatments": []
73            }
74        ],
75        "status": "released",
76        "summary": "Parse SPLiT-seq"
77    },
78    "file_size": 11463314759,
79    "flowcell_id": "HVYNYDSX5",
80    "gene_list_for": [],
81    "href": "/sequence-files/IGVFFI5993XTCF/@@download/IGVFFI5993XTCF.fastq.gz",
82    "illumina_read_type": "R1",
83    "input_file_for": [
84        "/matrix-files/IGVFFI9529UREU/"
85    ],
86    "integrated_in": [],
87    "lab": {
88        "@id": "/labs/ali-mortazavi/",
89        "title": "Ali Mortazavi, UCI"
90    },
91    "lane": 4,
92    "loci_list_for": [],
93    "maximum_read_length": 140,
94    "md5sum": "8cda10b36f05edd117afcc7a79c423ed",
95    "mean_read_length": 140,
96    "minimum_read_length": 140,
97    "quality_metrics": [],
98    "read_count": 170847071,
99    "read_names": [
100        "Read 1"
101    ],
102    "release_timestamp": "2025-04-18T23:29:13.567220+00:00",
103    "s3_uri": "s3://igvf-files/2023/10/07/f9c3d493-3f67-47e1-80bf-72c9c2113524/IGVFFI5993XTCF.fastq.gz",
104    "schema_version": "15",
105    "seqspecs": [
106        "/configuration-files/IGVFFI3859AKBU/"
107    ],
108    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
109    "sequencing_platform": {
110        "@id": "/platform-terms/EFO_0008637/",
111        "status": "released",
112        "term_name": "Illumina NovaSeq 6000"
113    },
114    "sequencing_run": 4,
115    "status": "released",
116    "submitted_by": {
117        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
118        "title": "Diane Trout"
119    },
120    "submitted_file_name": "igvf_005/nova2/igvf_005_B10_D_nova_N2_L004_R1.fastq.gz",
121    "summary": "R1 reads from sequencing run 4",
122    "upload_status": "validated",
123    "uuid": "f9c3d493-3f67-47e1-80bf-72c9c2113524"
124}