IGVFFI5991QRNA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9634KYPQ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X051_G7_P069_L003_R3

md5sum

5f2d87fa283dac06f40390e73800fec6

Content MD5sum

ee6cd7734685a288ed0c4c787c03cf96

File Size

9.9 GB

Submitted File Name

Multiome_ATAC_X051_G7_L007_P069_S15_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

148058127

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9972OZUY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples