IGVFFI5991HFRI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3080TIMY(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X032_G1_P031_L003_R1

md5sum

ca72f494f5ae8613be0c5f8e0a7dd25d

Content MD5sum

dc6b96481bf6981e542301f367989d39

File Size

15 GB

Submitted File Name

Multiome_ATAC_X032_G1_L001_P031_S37_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

285011969

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6835GLQE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples