Home

IGVFFI5987FVNB

released
validated
File Set
IGVFDS1528BZHL(CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jay-shendure:CRISPRa_singlevalidations_K562_FOXP1_rep3_R2
md5sum
0cd67e7dfeee06df7652abc6fd120b01
Content MD5sum
fda74e9765086aa4531726d16cdbeb56
File Size
154 MB
Submitted File Name
/net/shendure/vol10/projects/IGVFtemp/pooled_fastqs/K562_gRNA_23_Rep_3_FOXP1_S6_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jay Shendure, UW

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Lane
1
Sequencing Kit
NextSeq 1000/2000 P1 Reagent Kit
Average Read Length
110
Read Count
2963624

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
differential gene expression quantifications
differential gene expression quantifications
Jay Shendure, UW
39 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5987FVNB
Jay Shendure, UW
1.0 KB
validated