IGVFFI5977CMXK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2017QGND(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G3_P055_L002_I1

md5sum

2a5191760ea4615221d2586c5d994f96

Content MD5sum

5fec6b12dc77eb783bfa33aaf8f9f40b

File Size

483 MB

Submitted File Name

Multiome_ATAC_RP007_G3_L003_P055_S15_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63871094

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7646ONHX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples