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INDEXED
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SequenceFile
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IGVFFI5977CMXK
IGVFFI5977CMXK
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2017QGND
(single-nucleus ATAC-seq (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_RP007_G3_P055_L002_I1
md5sum
2a5191760ea4615221d2586c5d994f96
Content MD5sum
5fec6b12dc77eb783bfa33aaf8f9f40b
File Size
483 MB
Submitted File Name
Multiome_ATAC_RP007_G3_L003_P055_S15_L002_I1_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JGVLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
63871094
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7646ONHX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF