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IGVFFI5974QKPZ

released
validated
File Set
IGVFDS0584KNPT(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x5_NGS5_r3
md5sum
d2a0998d43bc56c453b580c98e5b0489
Content MD5sum
4e536019181762d3fe6edb13fcb39240
File Size
5.6 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC5_S9_L005_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
185308309

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.5 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0657MJFE, IGVFFI9153RBIU, IGVFFI5974QKPZ, IGVFFI8557NHEF
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford