IGVFFI5969CWGM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3511LRHY(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L003_R2

md5sum

3b7d6b8141891e9b1952a5fd2279073d

Content MD5sum

43302a7e8970e71bfaa60ab3b5b29840

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_RP029_G4_L004_P077_S30_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

80057494

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9093UXXC

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples