IGVFFI5958YYSM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6846AEHO(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G6_P075_L005_I1

md5sum

cc0639bc486aa57b14ecbd7f87724d1a

Content MD5sum

a2a3ee57563af5e6ad8ab947452e93bf

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_RP026_G6_L006_P075_S22_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

199440658

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5241MOXO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples