IGVFFI5956RRFZ

released

validated

File Set

IGVFDS0508ERUQ(scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jay-shendure:CRISPRa_singlecell_K562_VPR_sequence_exprs_10Xlane2_seqlane1_I1

md5sum

cf2ff935dd83d294812194dc160a6dde

Content MD5sum

5a044372c5c6b8a807a0e309cd107171

File Size

906 MB

Submitted File Name

/net/shendure/vol10/www/content/members/CRISPRa_QTL_website/public/data/K562_data/sequencing_data/cellranger_mkfastq_output/outs/fastq_path/AAAHG2HHV/VPR_exprs_2/VPR_exprs_2_S4_L001_I1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina NextSeq 2000

Sequencing Run

Flowcell ID

AAAHG2HHV

Lane

Sequencing Kit

NextSeq 1000/2000 P3 Reagent Kit

Illumina Read Type

Average Read Length

Read Count

144716774

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM9542NUGS

InVitroSystem

K562

K562 cell line (cellular sub pool: 10Xlane2), female, Homo sapiens modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library