Home

IGVFFI5956BYXD

released
validated
File Set
IGVFDS8684IGUT(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-dss05_prim_5k_RNA.R1.fastq.gz
md5sum
a097c2216a9fa987d6ffbce9e1b324be
Content MD5sum
44eddf0f2af18928e8b5f58a310572d6
File Size
1.3 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/dss05_prim_5k_RNA.R1.fastq.gz
Checkfiles Version
v14
Submitter Comment
DSS05-prim-5k_P1.55
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
40173022

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
111 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5956BYXD, IGVFFI9578CUCM, IGVFFI2379YDYJ
Jason Buenrostro, Broad
1.2 KB
validated