Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI5954GTBM
IGVFFI5954GTBM
preview
validated
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0506QTXH
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 72
File Format
fastq
Content Type
reads
Aliases
jimmie-ye:XX10-SC4_snRNA_S3_R1
md5sum
63416ddfed887fbbbc4409da2041d163
Content MD5sum
63c5bd3ac0b6343cfd75f7ae225b1abe
File Size
7.3 GB
Submitted File Name
production_data/xhlt1/data/single_cell_GEX/raw/XHLT1-POOL-XX10-SC4/BHM2MWDSX2/XHLT1-POOL-XX10-SC4-GEX_S6_L004_R1_001.fastq.gz
Checkfiles Version
v17
Attribution
Jimmie Ye, UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
72
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
218751258
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5108TWAL
MultiplexedSample
peripheral blood mononuclear cell
multiplexed sample: Homo sapiens (male, 29.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell; ... and 17 more samples