{
"@context": "/terms/",
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"@type": [
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"File",
"Item"
],
"accession": "IGVFFI5952WLSN",
"aliases": [
"gary-hon:LW270_8_R2"
],
"assay_titles": [
"Perturb-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011996/",
"component": "functional characterization"
},
"content_md5sum": "229aabc61976938830f41aca60009e8f",
"content_type": "reads",
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"creation_timestamp": "2024-04-25T22:26:19.815489+00:00",
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"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS5158EDZB/",
"accession": "IGVFDS5158EDZB",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM6628JOOL/",
"accession": "IGVFSM6628JOOL",
"classifications": [
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],
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{
"@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
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{
"@id": "/sample-terms/EFO_0003045/",
"status": "released",
"term_name": "H9"
}
],
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"targeted_sample_term": {
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"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens"
}
],
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"summary": "CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci"
},
"file_size": 11073099356,
"flowcell_id": "22FJH2LT3",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI5952WLSN/@@download/IGVFFI5952WLSN.fastq.gz",
"illumina_read_type": "R2",
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"integrated_in": [],
"lab": {
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"title": "Gary Hon, UT"
},
"lane": 8,
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"maximum_read_length": 151,
"md5sum": "8381ae6077480a0555d382c610535627",
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"s3_uri": "s3://igvf-files/2024/04/25/5a31b706-f3a3-43cd-b7e9-6972208ca002/IGVFFI5952WLSN.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 2000"
},
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"status": "preview",
"submitted_by": {
"@id": "/users/b05645f1-2d56-4a5e-b272-4601e555a3fa/",
"title": "Mpathi Nzima"
},
"submitted_file_name": "/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-10-25-McDermott-NovaSeq.lane8.10X/10X//LW270_S2_L008_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 2",
"upload_status": "validated",
"uuid": "5a31b706-f3a3-43cd-b7e9-6972208ca002"
}