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SequenceFile
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IGVFFI5950DFLI
IGVFFI5950DFLI
released
validated
Json view
File Set
IGVFDS0584KNPT
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x5_NGS2_r1
md5sum
0aedf097c841add43a059bcf3e2d8410
Content MD5sum
6f34dc2e182267519a1df722819fbe9e
File Size
5.7 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC5_S24_L008_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
51
Read Count
190745245
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1640UGWP
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8471WSXF
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.5 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4033DLOK
yaml
seqspec
seqspec of IGVFFI5950DFLI, IGVFFI1525YMBZ, IGVFFI0760ACLV, IGVFFI1027NULG
Ansuman Satpathy, Stanford
1.4 KB
validated