IGVFFI5934ZYKG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7131KXFQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G5_P013_L001_R1

md5sum

bdc738820feb4bf67330544ae3ac890b

Content MD5sum

5c06f429d61c33466c4373d6c22b4fac

File Size

9.4 GB

Submitted File Name

Multiome_ATAC_X015_G5_L005_P013_S11_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

301252394

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4134PPFH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples