IGVFFI5928VRYG

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI5928VRYG/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI5928VRYG",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_md5sum": "515cc41dbf1e7b35c916cf80126925b6",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-04-30T22:36:55.286001+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI6915KRKK/"
    ],
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS9445YYVB/",
        "accession": "IGVFDS9445YYVB",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM2294BOOU/",
                "accession": "IGVFSM2294BOOU",
                "classifications": [
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq"
    },
    "file_size": 4640027718,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI5928VRYG/@@download/IGVFFI5928VRYG.fastq.gz",
    "input_file_for": [
        "/tabular-files/IGVFFI9644KUXI/",
        "/tabular-files/IGVFFI2461OHLX/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "maximum_read_length": 107251,
    "md5sum": "f87d31aeb3cf7963a733fef1779b1c5e",
    "mean_read_length": 814,
    "minimum_read_length": 12,
    "read_count": 6292043,
    "release_timestamp": "2024-05-08T23:38:44.098275+00:00",
    "s3_uri": "s3://igvf-files/2024/04/30/45958b69-808f-4a69-8d0d-63eabeefc970/IGVFFI5928VRYG.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "ONT Ligation Sequencing Kit V14",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008633/",
        "status": "released",
        "term_name": "ONT GridION X5"
    },
    "sequencing_run": 4,
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "igvf_b01/nanopore/igvfb01_13H_lig-ss_4.fastq.gz",
    "summary": "reads from sequencing run 4",
    "upload_status": "validated",
    "uuid": "45958b69-808f-4a69-8d0d-63eabeefc970"
}