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INDEXED
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SequenceFile
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IGVFFI5920TVOB
IGVFFI5920TVOB
released
validated
Json view
File Set
IGVFDS1847PMGO
(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 1589
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_1589_R1
buenrostro-bernstein:SS-LS_1589_R1
md5sum
bdd5246cfe89a3a8e5f3cd22961098ff
Content MD5sum
230cca44f0a56d91e2c6b1f09a3eec0a
File Size
11 KB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-1086_L3_SS-PKR-2_SS-V2-PLATE2-3rd-THIRD_R1.fastq.gz
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1589
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
287
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM9496THJI
PrimaryCell
bone marrow
bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (37 years)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4279WJVY
tsv
fragments
GRCh38 fragments
Jason Buenrostro, Broad
13 GB
validated
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad