IGVFFI5900JZET

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5362QJCF(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G3_P059_L006_R3

md5sum

8e9184e6cf9aa8bc5cd4e10f76626763

Content MD5sum

d6a600cf2c93e6c5466bfdece159b438

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP011_G3_L003_P059_S75_L006_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52139053

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0695RJYV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples