IGVFFI5888DPQK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4798VEDI(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X021_G2_P019_L003_R1

md5sum

56d5ad389ef5a92aed8a3059d2d5ac39

Content MD5sum

665c92e6a2ff2bf339768da0a19b5de3

File Size

5.0 GB

Submitted File Name

Multiome_ATAC_X021_G2_L002_P019_S42_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

161929953

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5442PEFD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples