IGVFFI5878MQQJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6713WNIZ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G3_P057_L001_R1

md5sum

eeb4af483f78b9ccd3435e54ddc92f4e

Content MD5sum

b60ad7c86e010ff7f44cc2b14cb6c8a9

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP008_G3_L003_P057_S3_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

34069854

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3559TDPL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples