IGVFFI5866QLQK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7451ZVNG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G6_P053_L001_R1

md5sum

6fa68ad263e8374f9748e6b336280883

Content MD5sum

2f1e7db68c92f8f19085dd3b848e288d

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_RP004_G6_L006_P053_S14_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

78516357

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9792MUYY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples