IGVFFI5853VWQL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8318EODY(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G2_P043_L008_R3

md5sum

f6616fe2f7facea355364f5f8cbaf97d

Content MD5sum

2a3be01b962a365467aa04d0f3507b5e

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_X044_G2_L002_P043_S36_L008_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67595265

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6240XBPL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples